Publications

Armstrong, Ellie E. and Campana, Michael G. 2023. "RatesTools: a Nextflow pipeline for detecting de novo germline mutations in pedigree sequence data." Bioinformatics, 39, (1) btac784. https://doi.org/10.1093/bioinformatics/btac784..

Walsh, Jennifer, Bowman, Reed, Brawn, Jeffrey D., Covino, Kristen M., Dugger, Katie M., Fleischer, Robert C., Houtz, Jennifer L., Mahoney, Sean M., Pruett-Jones, Melinda, Tarwater, Corey E., and Fair, Jeanne. 2023. "Professional ethics survey identifies strengths and areas for improvement in the American Ornithological Society." Ornithology, 140, (1). https://doi.org/10.1093/ornithology/ukac053..

Aardema, Matthew L., Campana, Michael G., Wagner, Nicole E., Ferreira, Francisco C., and Fonseca, Dina M. 2022. "A gene-based capture assay for surveying patterns of genetic diversity and insecticide resistance in a worldwide group of invasive mosquitoes." PLOS Neglected Tropical Diseases, 16, (8). https://doi.org/10.1371/journal.pntd.0010689..

Abreu, Edson F., Pavan, Silvia E., Tsuchiya, Mirian T. N., McLean, Bryan S., Wilson, Don E., Percequillo, Alexandre R., and Maldonado, Jesus E. 2022. "Old specimens for old branches: Assessing effects of sample age in resolving a rapid Neotropical radiation of squirrels." Molecular phylogenetics and evolution, 175. https://doi.org/10.1016/j.ympev.2022.107576..

Armstrong, Ellie E., Campana, Michael G., Solari, Katherine A., Morgan, Simon R., Ryder, Oliver A., Naude, Vincent N., Samelius, Gustaf, Sharma, Koustubh, Hadly, Elizabeth A., and Petrov, Dmitri A. 2022. "Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris)." G3-Genes Genomes Genetics, 12, (12). https://doi.org/10.1093/g3journal/jkac277..

Ballou, Jonathan D., Lacy, Robert C., Traylor-Holzer, Kathy, Bauman, Karen, Ivy, Jamie A., and Asa, Cheryl. 2022. "Strategies for establishing and using genome resource banks to protect genetic diversity in conservation breeding programs." Zoo biology, https://doi.org/10.1002/zoo.21741..

Byerly, Paige A., Chesser, R. Terry, Fleischer, Robert C., McInerney, Nancy, Przelomska, Natalia A. S., and Leberg, Paul L. 2022. "Museum Genomics Provide Evidence for Persistent Genetic Differentiation in a Threatened Seabird Species in the Western Atlantic." Integrative and Comparative Biology, https://doi.org/10.1093/icb/icac107..

Camargo, Issac, Álvarez-Castañeda, Sergio Ticul, Polly, P. David, Stuhler, John D., Maldonado, Jesús E., and Esselstyn, Jacob. 2022. "Molecular phylogenetic and taxonomic status of the large-eared desert shrew Notiosorex evotis (Eulipotyphla: Soricidae)." Journal of mammalogy, https://doi.org/10.1093/jmammal/gyac069..

Campana, Michael G. and Armstrong, Ellie E. 2022. [Dataset] Test Dataset for 'RatesTools: a Nextflow pipeline for detecting de novo germline mutations in pedigree sequence data'. Distributed by National Zoo and Smithsonian Conservation Biology Institute. https://doi.org/10.25573/DATA.20250288.V2..

Castañeda-Rico, Susette, Edwards, Cody W., Hawkins, Melissa T. R., and Maldonado, Jesús E. 2022. "Museomics and the holotype of a critically endangered cricetid rodent provide key evidence of an undescribed genus." Frontiers in Ecology and Evolution, 10. https://doi.org/10.3389/fevo.2022.930356..

Castañeda-Rico, Susette, Maldonado, Jesús E., Dowler, Robert C., and Edwards, Cody W. 2022. "First mitochondrial genome of the Amazonian marsh rat Holochilus sciureus Wagner 1842 (Rodentia, Cricetidae, Sigmodontinae)." Mitochondrial DNA Part B-Resources, 7, (8) 1562–1564. https://doi.org/10.1080/23802359.2022.2107956..

Clark, Jonathan D., Benham, Phred M., Maldonado, Jesus E., Luther, David A., and Lim, Haw Chuan. 2022. "Maintenance of local adaptation despite gene flow in a coastal songbird." Evolution, https://doi.org/10.1111/evo.14538..

Clark, Jonathan D., Luther, David A., Benham, Phred M., Maldonado, Jesus E., and Lim, Haw Chuan. 2022. [Dataset] Data from: Maintenance of local adaptation despite gene flow in a coastal songbird. Distributed by Dryad. https://doi.org/10.5061/DRYAD.GHX3FFBR5..

Ferreira, Francisco C., Videvall, Elin, Seidl, Christa M., Wagner, Nicole E., Kilpatrick, A. Marm, Fleischer, Robert C., and Fonseca, Dina M. 2022. "Transcriptional response of individual Hawaiian Culex quinquefasciatus mosquitoes to the avian malaria parasite Plasmodium relictum." Malaria Journal, 21, (1). https://doi.org/10.1186/s12936-022-04271-x..

Fleischer, Robert C., Campana, Michael G., and James, Helen F. 2022. "Hawaiian songbird radiations." Current Biology, 32, (20) R1070–R1072. https://doi.org/10.1016/j.cub.2022.08.057..

Gooley, Rebecca M., Dicks, Kara L., Ferrie, Gina M., Lacy, Robert C., Ballou, Jonathan D., Callicrate, Taylor, Senn, Helen, Koepfli, Klaus-Peter, Edwards, Cody W., and Pukazhenthi, Budhan S. 2022. "Applying genomics to metapopulation management in North American insurance populations of southern sable antelope (Hippotragus niger niger) and addra gazelle (Nanger dama ruficollis)." Global Ecology and Conservation, 33. https://doi.org/10.1016/j.gecco.2021.e01969..

Jiménez, Randall R., Carfagno, Amy, Linhoff, Luke, Gratwicke, Brian, Woodhams, Douglas C., Chafran, Liana Soares, Bletz, Molly C., Bishop, Barney, and Muletz-Wolz, Carly R. 2022. "Inhibitory Bacterial Diversity and Mucosome Function Differentiate Susceptibility of Appalachian Salamanders to Chytrid Fungal Infection." Applied and Environmental Microbiology, 88, (8). https://doi.org/10.1128/aem.01818-21..

Kearns, Anna M., Campana, Michael G., Slikas, Beth, Berry, Lainie, Saitoh, Takema, Cibois, Alice, and Fleischer, Robert C. 2022. "Conservation genomics and systematics of a near‐extinct island radiation." Molecular ecology, https://doi.org/10.1111/mec.16382..

Kirchman, Jeremy J., McInerney, Nancy Rotzel, Giarla, Thomas C., Olson, Storrs L., Slikas, Elizabeth, and Fleischer, Robert C. 2022. "Corrigendum to: Phylogeny based on ultra-conserved elements clarifies the evolution of rails and allies (Ralloidea) and is the basis for a revised classification." Ornithology, 139, (1). https://doi.org/10.1093/ornithology/ukab065..

McDonough, Molly M., Ferguson, Adam W., Dowler, Robert C., Gompper, Matthew E., and Maldonado, Jesus E. 2022. "Phylogenomic systematics of the spotted skunks (Carnivora, Mephitidae, Spilogale): Additional species diversity and Pleistocene climate change as a major driver of diversification." Molecular phylogenetics and evolution, 167. https://doi.org/10.1016/j.ympev.2021.107266..