Ataroff, M. and M. Monasterio, 1997. Soil erosion under different management of coffee plantations in the Venezuelan Andes. Soil Technology 11:95-108.
Ambrecht, I., L. Rivera and Perfecto, I. 2005. Reduced diversity and complexity in the leaf-litter ant assemblage of Colombian coffee plantations. Conservation Biology, 19(3): 897-907.
Bakermans, M. A. Vitz, A. Rodewald, and G. Rengifo, 2009. Migratory songbirds use of shade coffee in the Venezuelan Andes with implications for conservation of cerulean warbler. Biological conservation 142:2476-2483.
Caudill, S. A. and R. Rice, 2016. Do Bird Friendly® Coffee Criteria Benefit Mammals? Assessment of Mammal Diversity in Chiapas, Mexico. PLoS ONE, 11(11).
Cruz-Angon, A. and R. Greenberg, 2005. Are epiphytes important for birds in coffee plantations? An experimental assessment. Journal of Applied Ecology 42: 150-159.
Davis, H., R. Rice, L. Rockwood, T. Wood, and P. Marra, 2017. The economic potential of fruit trees as shade in blue mountain coffee agroecosystems of the Yallahs River watershed, Jamaica W.I. Agroforestry Systems, 1–9.
De La Mora, J., G. Livingston and Philpott, S. 2008. Arboreal Ant Abundance and Leaf Miner Damage in Coffee Agroecosystems in Mexico. Biotropica, 40(6): 742-746.
Gligo, N., 1986. Agricultura y Medio Ambiente en America Latina. EDUCA/SIAP, Editorial Universitaria Centroamericana. San Jose, Costa Rica.
Granger, S. 2010. Central America coffee land to shrink as globe warms. Reuters News Service, May 19, 2010.
Greenberg, R., P. Bichier, A. Cruz and Reitsma, R. 1997b. Bird populations in shade and sun coffee plantations in Central Guatemala. Conservation Biology, 11: 448-459 pp.
Greenberg, R. , P. Bichier and J. Sterling, 1997. Bird populations in rustic and planted shade coffee plantations of eastern Chiapas, Mexico. Biotropica 29(4):501-514.
Greenberg, R. P. Bichier, A Crus, C. MacVean, R. Perez and E. Cano, 2000. The impact of avian insectivory on arthropods and leaf damage in some Guatemalan coffee plantations. Ecology 81(6):1750-1755.
Iijima, M., Y. Izumi, E. Yuliadi, Sunyoto, Afandi and Utomo, M. 2003. Erosion Control on Steep Sloped Coffee Field in Indonesia with Alley Cropping, Intercropped Vegetables and No-Tillage. Plant Production Science, 6(3): 224-229 pp.
Jha, S., C. Bacon, S. Philpott, R. Rice, V. E. Méndez, & P. Läderach, 2011. A Review of Ecosystem Services, Farmer Livelihoods, and Value Chains in Shade Coffee Agroecosystems. In Integrating Agriculture, Conservation and Ecotourism: Examples from the Field 141–208.
Jha, S., C. Bacon, S. Philpott, R. Rice, V. E. Méndez, P. Läderach, & Rice 2014.
Shade Coffee: Update on a Disappearing Refuge for Biodiversity. Bioscience 64: 416-428.
Kellerman, J., M. Johnson, A. Stercho and S. Hackett, 2008. Ecological and Economic Services Provided by Birds on Jamaican Blue Mountain Coffee Farms. Conservation Biology, Volume 22, No. 5, 1177-1185
Klein, A., I. Steffan-Dewenter and T. Tscharntke, 2003a. Pollination of Coffea canephora in relation to local and regional agroforestry management. Journal of Applied Ecology 40:837-845.
Klein, A., I. Steffan-Dewenter and T. Tscharntke, 2003b. Fruit set of highland coffee increases with the diversity of pollinating bees. Proceedings of the Royal Society of London270:955-961.
Laderach, P., M. Lundy, A. Jarvis, J. Ramirez, E. Perez, K. Schepp, 2009. Predicted impact of climate change on coffee supply chains. Paper prepared at International Center for Tropical Agriculture (CIAT) office in Managua, Nicaragua.
Lopez-Gomez, A.M., G. Williams-Linera and Manson, R.H. 2008. Tree species diversity and vegetation structure in shade coffee farms in Veracruz, Mexico. Agriculture, Ecosystems and Environment, 124:160-172.
Mas AH, Dietsch TV (2004) Linking shade coffee certification to biodiversity conservation: butterflies and birds in Chiapas, Mexico. Ecological Applications 14:642-654
Masera, O. et al, 2003. Modeling carbon sequestration in afforestation, agroforestry and forest management projects: the CO2FIX V.2 approach. Ecological Modeling 164 (2003) 177-199.
Millennium Ecosystem Assessment. 2003. Ecosystems and Human Well-being. A Report of the Conceptual Framework Working Group. Island Press. Washington, Covelo, London. 245 pp.
Moguel, P. and V. Toledo. 1999. Biodiversity Conservation in Traditional Coffee Systems of Mexico. Conservation Biology, 13 (1): 11-21.
Palm CA, et al. 2005. Carbon losses and sequestration with land use change in the humid tropics. Pages 41–63 in Palm CA, Vosti SA, Sanches PA, Ericksen PJ, eds. Slash-and-Burn Agriculture: The Search for Alternatives. Columbia University Press.
Peters, V., T. Carlo, M. Mello, R. Rice, D. Tallamy, S. A. Caudill, & T. Fleming, 2016. Using Plant–Animal Interactions to Inform Tree Selection in Tree-Based Agroecosystems for Enhanced Biodiversity. BioScience 66(12):1046–1056.
Peters, V., & R. Greenberg, nd. Fruit Supplementation Affects Birds but not Arthropod Predation by Birds in Costa Rican Agroforestry Systems. Biotropica 45(1):102–110.
Perfecto, I., A. Mas, T. Dietsch, and J. Vandermeer. 2003. Conservation of biodiversity in coffee agroecosystems: a tri-taxa comparison in southern Mexico. Biodiversity and Conservation 12:1239-1252.
Perfecto, I., J. Vandermeer, G. Lopez, G. Ibarra, R. Greenberg, P. Bichier and S. Langridge, 2004. Greater predation in shaded farms: the role of resident neotropical birds. Ecology85(10): 2677?2681
Perfecto, I. and J. Vandermeer, 2010. The agroecological matrix as alternative to the land-sparing/agriculture intensification model. PNAS Early Edition, accessed at www.pnas.org/cgi/doi/10.1073/pnas.0905455107
Perfecto, I., R. Rice, R. Greenberg and M. Van der Voort 1996. Shade coffee: a disappearing refuge for biodiversity. BioScience 46(8):598-608.
Philpott, S., I. Perfecto and Vandermeer, J. 2006. Effects of Management Intensity and Season on Arboreal Ant Diversity and Abundance in Coffee Agroecosystems. Biodiversity and Conservation, 15: 139-155 pp.
Philpott, S., P. Bichier, R. Rice and R. Greenberg, 2007. Field-testing ecological and economic benefits of coffee certification programs. Conservation Biology 21(4):975-985.
Philpott, S., W. Arendt, I. Armbrecht, P. Bichier, T. Dietsch, C. Gordon, R. Greenberg, I. Perfecto, R. Reynoso-Santos, L. Soto-Pinto, C. Tejeda-Cruz, G. Williams-Linera, J. Valenzuela, and J. Zolotoff 2008. Conservation Biology 22(5):1093-1105.
Philpott, S., B. Lin , S. Jha and S. Brines 2008. A multi-scale assessment of hurricane impacts on agricultural landscapes based on land use and topographic features Agriculture, Ecosystems and Environment 128(1-2):12-20.
Rice, R. 1990. Transforming Agriculture: The Case of Coffee Leaf Rust and Coffee Renovation in Southern Nicaragua. Dissertation in Geography, University of California, Berkeley. 304 pp.
Rice, R. 2008. Agricultural intensification within agroforestry: The case of coffee and wood products. Agriculture, Ecosystems and the Environment 128:212-218.
Rice, R. 2011. Fruits from shade trees in coffee: how important are they? Agroforestry Systems, 83(1):41–49.
Tscharntke, T., J. Milder, G. Schroth, Y. Clough, F. DeClerck, A. Waldron, … J. Ghazoul, nd. Conserving Biodiversity Through Certification of Tropical Agroforestry Crops at Local and Landscape Scales. Conservation Letters, 8(1), 14–23.
van Noordwijk, M., S. Rahayu, K. Hairiah, Y.C. Wulan, A. Farida and Verbist, B. 2002.Carbon stock assessment for a forest-to-coffee conversion landscape in Sumber-Jaya (Lampung, Indonesia): from allometric equations to land use change analysis. Science in China, 45: 75-86 pp.
Van Noordwijk, M., S. Rahayu, K. Hairiah, Y. Wulan, Farida, B. Verbist, nd. Carbon stock assessment for a forest-to-coffee conversion landscape in Sumber-Jaya (Lampung, Indonesia): from allometric equations to land use change analysis, accessed at www.worldagroforestrycentre.org/SEA/Publications/files/.../PP0157-05.PDF
Vaast, P., Bertrand, B., Perriot, J.-J., Guyot, B. and Genard, M., 2006, Fruit thinning and shade improve bean characteristics and beverage quality of coffee (Coffea arabica L.) under optimal conditions. Journal of the Science of Food and Agriculture, Vol. 86, p. 197.
Vaast, P., J. Beer, C. Harvey, J. Harmand , 2005. Environmental services of coffee agroforestry system in Central America: a promising potential to improve the livelihoods of coffee farmers? communities. Paper presented at the conference 'Integrated Management of Environmental Services in Human-Dominated Tropical Landscapes', CATIE, Turrialba, Costa Rica.
Wardle DA, Bardgett RD, Callaway RM, Van der Putten WH. Terrestrial ecosystem responses to species gains and losses, Science , 2011, vol. 332 (pg. 1273-1277).
Williams-Guillen, K., I. Perfecto, J. Vandermeer, 2008. Bats limit insects in a neotropical agroforestry system. Science 320:70